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A
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B
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C
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D
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F
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G
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L
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M
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P
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R
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S
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T
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W
A
autocorr() (in module dylightful.preanalysis)
B
build_tae_msm() (in module dylightful.msm)
C
calculate_aic() (in module dylightful.metrics)
calculate_bic() (in module dylightful.metrics)
calculate_max_probas() (in module dylightful.metrics)
calculate_mean_probas() (in module dylightful.metrics)
calculate_min_probas() (in module dylightful.metrics)
D
dylightful
module
dylightful.bar_plot
module
dylightful.discretizer
module
dylightful.mdanalysis
module
dylightful.metrics
module
dylightful.msm
module
dylightful.parser
module
dylightful.plot_hmm
module
dylightful.postprocess
module
dylightful.preanalysis
module
dylightful.utilities
module
F
find_states_gaussian() (in module dylightful.discretizer)
find_states_kmeans() (in module dylightful.discretizer)
fit_msm() (in module dylightful.msm)
G
generate_state_map() (in module dylightful.postprocess)
get_atom_serials() (in module dylightful.parser)
get_dir() (in module dylightful.utilities)
get_distinct_superfeatures() (in module dylightful.postprocess)
get_env_partners() (in module dylightful.postprocess)
get_information_mstates() (in module dylightful.postprocess)
get_information_pc() (in module dylightful.postprocess)
get_name() (in module dylightful.utilities)
get_time_series() (in module dylightful.parser)
get_unique_env_partner() (in module dylightful.postprocess)
L
load_env_partners() (in module dylightful.parser)
load_env_partners_mixed() (in module dylightful.parser)
load_parsed_dyno() (in module dylightful.utilities)
load_time_ser_superfeat() (in module dylightful.postprocess)
load_validation() (in module dylightful.postprocess)
M
make_barplot() (in module dylightful.bar_plot)
make_name() (in module dylightful.utilities)
map_pharmacophore_states() (in module dylightful.msm)
model_msm() (in module dylightful.msm)
module
dylightful
dylightful.bar_plot
dylightful.discretizer
dylightful.mdanalysis
dylightful.metrics
dylightful.msm
dylightful.parser
dylightful.plot_hmm
dylightful.postprocess
dylightful.preanalysis
dylightful.utilities
P
parse_file_path() (in module dylightful.utilities)
plot_clustered_traj() (in module dylightful.msm)
plot_ellbow_kmeans() (in module dylightful.discretizer)
plot_score() (in module dylightful.plot_hmm)
plot_scores_kmeans() (in module dylightful.discretizer)
plot_state_diagram() (in module dylightful.plot_hmm)
plot_tae_training() (in module dylightful.discretizer)
plot_tae_transform() (in module dylightful.discretizer)
plot_transmat_graph() (in module dylightful.plot_hmm)
plot_transmat_map() (in module dylightful.plot_hmm)
postprocessing_msm() (in module dylightful.postprocess)
R
rewrites_time_series() (in module dylightful.parser)
S
save_dict() (in module dylightful.utilities)
smooth_projection_gaussian() (in module dylightful.discretizer)
smooth_projection_k_means() (in module dylightful.discretizer)
sort_markov_matrix() (in module dylightful.postprocess)
T
tae_discretizer() (in module dylightful.discretizer)
W
write_dcd() (in module dylightful.mdanalysis)
write_state() (in module dylightful.mdanalysis)
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